If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ), 'gf_id' => 'HOM05D000682', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000682' ), 'data_identifier' => 'HOM05D000682', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000682', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p12610' => 'bna', 'A01p30600' => 'bna', 'A03p27050' => 'bna', 'A04p19980' => 'bna', 'A05p09240' => 'bna', 'A09p16660' => 'bna', 'Aa31LG1G3220' => 'aar', 'Aa31LG2G9090' => 'aar', 'Aa31LG5G21830' => 'aar', 'Aa31LG5G9930' => 'aar', 'Aa31LG6G3260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1565' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.1567' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3854' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1955' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2001' => 'aag', 'Actinidia05540' => 'ach', 'Actinidia11316' => 'ach', 'Actinidia12119' => 'ach', 'Actinidia12121' => 'ach', 'Actinidia13310' => 'ach', 'Actinidia14663' => 'ach', 'Actinidia15730' => 'ach', 'Actinidia31223' => 'ach', 'Actinidia36551' => 'ach', 'Actinidia36552' => 'ach', 'Actinidia36553' => 'ach', 'Ah.01g005520' => 'amhyb', 'Ah.01g021540' => 'amhyb', 'Ah.03g139470' => 'amhyb', 'Ah.03g139550' => 'amhyb', 'Ah.08g211100' => 'amhyb', 'Ah.08g211110' => 'amhyb', 'Ah.10g035230' => 'amhyb', 'Ah.16g105280' => 'amhyb', 'AL2G14380' => 'aly', 'AL4G17410' => 'aly', 'AL4G32810' => 'aly', 'AL7G32850' => 'aly', 'Aqoxy1G01003' => 'aox', 'Aqoxy2G01517' => 'aox', 'Aqoxy6G01083' => 'aox', 'Aqoxy7G01633' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BBN6W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.12KYVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1HLM41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6SCC5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7K42MU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7Z1J2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I5BUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ1GHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYY1I0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFDJ4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MPW62I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL74VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRY7KT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4JBZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI2FPQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0CJR3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8W766' => 'arhy', 'AT1G11540' => 'ath', 'AT1G61740' => 'ath', 'AT2G25737' => 'ath', 'AT2G36630' => 'ath', 'AT4G21250' => 'ath', 'AT4G21260' => 'ath', 'ATR0315G142' => 'atr', 'ATR0315G153' => 'atr', 'ATR0665G469' => 'atr', 'ATR0804G074' => 'atr', 'Atru.chr1.3320' => 'acertr', 'Atru.chr1.3321' => 'acertr', 'Atru.chr1.3322' => 'acertr', 'Atru.chr1.3327' => 'acertr', 'Atru.chr1.3329' => 'acertr', 'Atru.chr1.3330' => 'acertr', 'Atru.chr10.2108' => 'acertr', 'Atru.chr10.2110' => 'acertr', 'Atru.chr3.558' => 'acertr', 'Atru.chr7.2157' => 'acertr', 'Atru.chr7.2158' => 'acertr', 'Atru.chr7.2159' => 'acertr', 'Atru.chr8.1693' => 'acertr', 'AUR62003162' => 'cqu', 'AUR62007982' => 'cqu', 'AUR62009328' => 'cqu', 'AUR62009349' => 'cqu', 'AUR62011641' => 'cqu', 'AUR62016470' => 'cqu', 'AUR62023014' => 'cqu', 'AUR62037911' => 'cqu', 'AUR62040164' => 'cqu', 'BcaB01g03821' => 'bca', 'BcaB02g09344' => 'bca', 'BcaB04g20367' => 'bca', 'BcaB06g28086' => 'bca', 'BcaB07g31282' => 'bca', 'BcaC01g04907' => 'bca', 'BcaC02g08329' => 'bca', 'BcaC02g11776' => 'bca', 'BcaC04g22348' => 'bca', 'BcaC09g51240' => 'bca', 'BcaC09g51241' => 'bca', 'BcaNung03830' => 'bca', 'BcaNung06867' => 'bca', 'BcaNung06923' => 'bca', 'BolC1t01468H' => 'bol', 'BolC1t03849H' => 'bol', 'BolC3t15587H' => 'bol', 'BolC4t22801H' => 'bol', 'BolC4t27093H' => 'bol', 'BolC9t54933H' => 'bol', 'BraA01t01205Z' => 'bra', 'BraA01t03192Z' => 'bra', 'BraA03t11918Z' => 'bra', 'BraA04t17581Z' => 'bra', 'BraA05t19880Z' => 'bra', 'BraA09t37305Z' => 'bra', 'C01p15180' => 'bna', 'C01p15210' => 'bna', 'C01p38990' => 'bna', 'C03p32460' => 'bna', 'C04p11510' => 'bna', 'C04p55620' => 'bna', 'C09p20280' => 'bna', 'CAN.G144.10' => 'can', 'CAN.G21.28' => 'can', 'CAN.G309.80' => 'can', 'CAN.G358.105' => 'can', 'CAN.G438.15' => 'can', 'CAN.G569.60' => 'can', 'CAN.G783.5' => 'can', 'CAN.G824.53' => 'can', 'CANSAT01G0503' => 'cansat', 'CANSAT25G1432' => 'cansat', 'CANSAT56G0871' => 'cansat', 'CANSAT56G0885' => 'cansat', 'CANSAT56G1794' => 'cansat', 'CANSAT80G2913' => 'cansat', 'CARHR011820' => 'chi', 'CARHR050600' => 'chi', 'CARHR115500' => 'chi', 'CARHR130910' => 'chi', 'CARHR227840' => 'chi', 'Carub.0001s1115' => 'cru', 'Carub.0002s0333' => 'cru', 'Carub.0004s0552' => 'cru', 'Carub.0004s1845' => 'cru', 'Carub.0007s2017' => 'cru', 'Ca_00204_v3' => 'car', 'Ca_00383_v3' => 'car', 'Ca_08950_v3' => 'car', 'Ca_11605_v3' => 'car', 'Ca_12339_v3' => 'car', 'Ca_12728_v3' => 'car', 'Ca_15618_v3' => 'car', 'Ca_17868_v3' => 'car', 'Ca_17869_v3' => 'car', 'Ca_22261_v3' => 'car', 'CBR_g19112' => 'cbr', 'CBR_g3275' => 'cbr', 'Cc02_g11740' => 'ccan', 'Cc04_g03130' => 'ccan', 'Cc06_g04970' => 'ccan', 'Cc07_g09400' => 'ccan', 'Cc08_g08990' => 'ccan', 'CDE02G1887' => 'cde', 'CDE02G3033' => 'cde', 'CDE05G0534' => 'cde', 'CDE05G3451' => 'cde', 'Cfa002086' => 'cfa', 'Cfa004298' => 'cfa', 'Cfa010448' => 'cfa', 'Cfa016413' => 'cfa', 'Cfa016505' => 'cfa', 'Ciclev10008167m.g' => 'ccl', 'Ciclev10010242m.g' => 'ccl', 'Ciclev10011694m.g' => 'ccl', 'Ciclev10015151m.g' => 'ccl', 'Ciclev10025446m.g' => 'ccl', 'Ciclev10025503m.g' => 'ccl', 'Ciclev10025511m.g' => 'ccl', 'CiPaw.01G036700' => 'cil', 'CiPaw.01G236900' => 'cil', 'CiPaw.01G237000' => 'cil', 'CiPaw.02G016500' => 'cil', 'CiPaw.02G149200' => 'cil', 'CiPaw.02G149400' => 'cil', 'CiPaw.02G149500' => 'cil', 'CiPaw.07G207000' => 'cil', 'CiPaw.08G023600' => 'cil', 'CiPaw.08G023700' => 'cil', 'CiPaw.09G006500' => 'cil', 'CiPaw.09G080800' => 'cil', 'CiPaw.10G003100' => 'cil', 'CiPaw.10G066800' => 'cil', 'CiPaw.11G209200' => 'cil', 'ClCG03G005070' => 'cla', 'ClCG04G009650' => 'cla', 'ClCG11G014030' => 'cla', 'ClCG11G014040' => 'cla', 'COL.COLO4_18694' => 'col', 'COL.COLO4_18695' => 'col', 'COL.COLO4_20807' => 'col', 'COL.COLO4_22094' => 'col', 'COL.COLO4_22278' => 'col', 'COL.COLO4_29247' => 'col', 'COL.COLO4_30407' => 'col', 'COL.COLO4_30408' => 'col', 'COL.COLO4_30409' => 'col', 'COL.COLO4_30410' => 'col', 'COL.COLO4_31690' => 'col', 'Cpa.g.sc2817.1' => 'cpa', 'Cpa.g.sc5.109' => 'cpa', 'Cpa.g.sc55.92' => 'cpa', 'Cpa.g.sc78.79' => 'cpa', 'Cpa.g.sc81.12' => 'cpa', 'Cre14.g627251' => 'cre', 'Cre14.g627350' => 'cre', 'Cre16.g658750' => 'cre', 'CsaV3_1G011260' => 'csa', 'CsaV3_3G047440' => 'csa', 'CsaV3_6G040290' => 'csa', 'CSS0002612' => 'camsi', 'CSS0010722' => 'camsi', 'CSS0013164' => 'camsi', 'CSS0014330' => 'camsi', 'CSS0016635' => 'camsi', 'CSS0024951' => 'camsi', 'CSS0032642' => 'camsi', 'CSS0033435' => 'camsi', 'CSS0050213' => 'camsi', 'DCAR_000745' => 'dca', 'DCAR_003114' => 'dca', 'DCAR_004179' => 'dca', 'DCAR_004496' => 'dca', 'DCAR_015023' => 'dca', 'DCAR_020789' => 'dca', 'DCAR_026330' => 'dca', 'Dinv14226' => 'din', 'Dinv18923' => 'din', 'Dinv18938' => 'din', 'Dinv30255' => 'din', 'Dinv30491' => 'din', 'Dinv35849' => 'din', 'Dinv37374' => 'din', 'Dinv38030' => 'din', 'Dinv39973' => 'din', 'Duzib093G1683' => 'dzi', 'Duzib128G1939' => 'dzi', 'Duzib147G1497' => 'dzi', 'Duzib150G0866' => 'dzi', 'Duzib160G0277' => 'dzi', 'Duzib168G0316' => 'dzi', 'Duzib168G0664' => 'dzi', 'Duzib187G0737' => 'dzi', 'Duzib187G0969' => 'dzi', 'Duzib192G0116' => 'dzi', 'Duzib192G0616' => 'dzi', 'Duzib192G0870' => 'dzi', 'Duzib235G1270' => 'dzi', 'Duzib264G1057' => 'dzi', 'ECA233G1485' => 'eca', 'ECA248G0382' => 'eca', 'ECA248G0459' => 'eca', 'ECA248G2733' => 'eca', 'EL10Ac2g04071' => 'bvu', 'EL10Ac6g14939' => 'bvu', 'EL10Ac7g16755' => 'bvu', 'EL10Ac9g22020' => 'bvu', 'Eucgr.A01580' => 'egr', 'Eucgr.C01581' => 'egr', 'Eucgr.C01582' => 'egr', 'Eucgr.C02892' => 'egr', 'Eucgr.D00851' => 'egr', 'Eucgr.D00852' => 'egr', 'Eucgr.F03030' => 'egr', 'Eucgr.H01268' => 'egr', 'Eucgr.L01941' => 'egr', 'FAN02G3118' => 'fan', 'FAN05G3063' => 'fan', 'FAN05G4196' => 'fan', 'FAN05G5338' => 'fan', 'FAN09G1349' => 'fan', 'FAN09G2058' => 'fan', 'FAN09G3150' => 'fan', 'FAN09G3917' => 'fan', 'FAN09G3993' => 'fan', 'FAN14G0225' => 'fan', 'FAN14G0701' => 'fan', 'FAN14G4167' => 'fan', 'FAN15G0292' => 'fan', 'FAN19G1863' => 'fan', 'FAN20G0049' => 'fan', 'FAN23G0014' => 'fan', 'FAN23G1913' => 'fan', 'FAN23G2786' => 'fan', 'FAN25G2920' => 'fan', 'FAN25G2961' => 'fan', 'FAN26G1541' => 'fan', 'FAN26G2604' => 'fan', 'FAN27G2850' => 'fan', 'FAN28G2976' => 'fan', 'FvH4_1g13440' => 'fve', 'FvH4_1g24930' => 'fve', 'FvH4_2g36080' => 'fve', 'FvH4_3g02900' => 'fve', 'FvH4_6g17410' => 'fve', 'FvH4_6g31610' => 'fve', 'FvH4_6g31630' => 'fve', 'FvH4_6g31640' => 'fve', 'FvH4_6g31650' => 'fve', 'FvH4_6g31850' => 'fve', 'FvH4_7g21430' => 'fve', 'Glyma.01G175200' => 'gma', 'Glyma.04G040600' => 'gma', 'Glyma.04G080300' => 'gma', 'Glyma.05G164600' => 'gma', 'Glyma.05G164700' => 'gma', 'Glyma.05G164800' => 'gma', 'Glyma.06G041500' => 'gma', 'Glyma.06G082000' => 'gma', 'Glyma.07G186600' => 'gma', 'Glyma.08G062600' => 'gma', 'Glyma.08G122100' => 'gma', 'Glyma.08G122167' => 'gma', 'Glyma.08G122233' => 'gma', 'Glyma.10G064500' => 'gma', 'Glyma.11G067400' => 'gma', 'Glyma.13G149100' => 'gma', 'Glyma.13G251400' => 'gma', 'Glyma.13G357800' => 'gma', 'Glyma.14G142300' => 'gma', 'Glyma.14G142500' => 'gma', 'Glyma.15G015600' => 'gma', 'Glyma.19G189500' => 'gma', 'Gohir.A01G140200' => 'ghi', 'Gohir.A02G120600' => 'ghi', 'Gohir.A04G067400' => 'ghi', 'Gohir.A05G048300' => 'ghi', 'Gohir.A05G131250' => 'ghi', 'Gohir.A05G167900' => 'ghi', 'Gohir.A07G023900' => 'ghi', 'Gohir.A10G016500' => 'ghi', 'Gohir.A11G043900' => 'ghi', 'Gohir.A11G184800' => 'ghi', 'Gohir.D01G129500' => 'ghi', 'Gohir.D03G066100' => 'ghi', 'Gohir.D04G106100' => 'ghi', 'Gohir.D05G050200' => 'ghi', 'Gohir.D05G130700' => 'ghi', 'Gohir.D05G170900' => 'ghi', 'Gohir.D07G027500' => 'ghi', 'Gohir.D10G016600' => 'ghi', 'Gohir.D11G047400' => 'ghi', 'Gohir.D11G191200' => 'ghi', 'Gorai.001G028700' => 'gra', 'Gorai.002G160300' => 'gra', 'Gorai.003G065000' => 'gra', 'Gorai.007G050900' => 'gra', 'Gorai.007G203800' => 'gra', 'Gorai.009G051700' => 'gra', 'Gorai.009G134400' => 'gra', 'Gorai.009G176100' => 'gra', 'Gorai.009G410000' => 'gra', 'Gorai.011G018300' => 'gra', 'Gorai.011G018500' => 'gra', 'GSVIVG01007340001' => 'vvi', 'GSVIVG01017062001' => 'vvi', 'GSVIVG01018980001' => 'vvi', 'GSVIVG01024425001' => 'vvi', 'GSVIVG01024437001' => 'vvi', 'GSVIVG01033741001' => 'vvi', 'GSVIVG01035669001' => 'vvi', 'HanXRQChr01g0028131' => 'han', 'HanXRQChr01g0029591' => 'han', 'HanXRQChr11g0350921' => 'han', 'HanXRQChr11g0351741' => 'han', 'HanXRQChr13g0400061' => 'han', 'Haze_03402' => 'cav', 'Haze_06691' => 'cav', 'Haze_06692' => 'cav', 'Haze_15103' => 'cav', 'Haze_16375' => 'cav', 'Haze_16384' => 'cav', 'Haze_19507' => 'cav', 'Haze_21855' => 'cav', 'Haze_21856' => 'cav', 'Haze_21858' => 'cav', 'Hma1.2p1_0084F.1_g042960' => 'hma', 'Hma1.2p1_0140F.1_g063510' => 'hma', 'Hma1.2p1_0422F.1_g150120' => 'hma', 'Hma1.2p1_0717F.1_g208160' => 'hma', 'Hma1.2p1_1130F.1_g259880' => 'hma', 'Hma1.2p1_1619F.1_g293950' => 'hma', 'HPP92_007788' => 'vpl', 'HPP92_017622' => 'vpl', 'HPP92_017636' => 'vpl', 'HPP92_017637' => 'vpl', 'HPP92_018701' => 'vpl', 'HPP92_018702' => 'vpl', 'HPP92_018783' => 'vpl', 'HPP92_018810' => 'vpl', 'HPP92_021258' => 'vpl', 'HPP92_023935' => 'vpl', 'HPP92_023956' => 'vpl', 'Hund00635' => 'sun', 'Hund04086' => 'sun', 'Hund06623' => 'sun', 'Hund09683' => 'sun', 'Hund09684' => 'sun', 'Hund09685' => 'sun', 'Hund14149' => 'sun', 'Hund16594' => 'sun', 'Hund16595' => 'sun', 'Hund20422' => 'sun', 'Lalb_Chr01g0018461' => 'lal', 'Lalb_Chr02g0155301' => 'lal', 'Lalb_Chr05g0218001' => 'lal', 'Lalb_Chr08g0243261' => 'lal', 'Lalb_Chr14g0362411' => 'lal', 'Lalb_Chr14g0362421' => 'lal', 'Lalb_Chr14g0372321' => 'lal', 'Lalb_Chr14g0372331' => 'lal', 'Lalb_Chr16g0383231' => 'lal', 'Lalb_Chr18g0060131' => 'lal', 'Lalb_Chr18g0060141' => 'lal', 'Lalb_Chr23g0269451' => 'lal', 'Lalb_Chr25g0288751' => 'lal', 'Lj1g0010409' => 'lja', 'Lj1g0026687' => 'lja', 'Lj2A126T24' => 'lonja', 'Lj2A275G33' => 'lonja', 'Lj2C452T4' => 'lonja', 'Lj2g0016266' => 'lja', 'Lj3A1006G33' => 'lonja', 'Lj3A1007T27' => 'lonja', 'Lj4g0002929' => 'lja', 'Lj4g0010424' => 'lja', 'Lj4g0011686' => 'lja', 'Lj4g0012888' => 'lja', 'Lj4g0020656' => 'lja', 'Lj4g0027761' => 'lja', 'Lj5g0011266' => 'lja', 'Lj5g0020352' => 'lja', 'Lj6g0021175' => 'lja', 'Lj7C707T1' => 'lonja', 'Lj8C596G1' => 'lonja', 'Lj8C603G11' => 'lonja', 'Lj8C603T14' => 'lonja', 'Lsat_1_v5_gn_1_49781' => 'lsa', 'Lsat_1_v5_gn_1_50821' => 'lsa', 'Lsat_1_v5_gn_5_34141' => 'lsa', 'Lsat_1_v5_gn_5_34221' => 'lsa', 'Lsat_1_v5_gn_6_29021' => 'lsa', 'Manes.01G134500' => 'mes', 'Manes.02G092700' => 'mes', 'Manes.03G062900' => 'mes', 'Manes.04G128550' => 'mes', 'Manes.04G128700' => 'mes', 'Manes.04G128800' => 'mes', 'Manes.08G018100' => 'mes', 'Manes.09G057800' => 'mes', 'Manes.11G038700' => 'mes', 'Manes.11G038800' => 'mes', 'Manes.16G017400' => 'mes', 'Manes.16G066000' => 'mes', 'Mapoly0044s0113' => 'mpo', 'Mapoly0055s0003' => 'mpo', 'Mapoly0055s0112' => 'mpo', 'Mapoly0111s0058' => 'mpo', 'Mapoly0115s0022' => 'mpo', 'MBI01_g39983_MAGBIO' => 'mbi', 'MBI01_g46976_MAGBIO' => 'mbi', 'MBI04_g29970_MAGBIO' => 'mbi', 'MBI04_g43861_MAGBIO' => 'mbi', 'MBI08_g05370_MAGBIO' => 'mbi', 'MBI12_g26531_MAGBIO' => 'mbi', 'MBI15_g14158_MAGBIO' => 'mbi', 'MBI16_g31215_MAGBIO' => 'mbi', 'MBI16_g31224_MAGBIO' => 'mbi', 'MBI18_g33848_MAGBIO' => 'mbi', 'MD02G1149600' => 'mdo', 'MD05G1336700' => 'mdo', 'MD08G1118000' => 'mdo', 'MD09G1210100' => 'mdo', 'MD09G1210200' => 'mdo', 'MD09G1210300' => 'mdo', 'MD12G1100900' => 'mdo', 'MD14G1095100' => 'mdo', 'MD14G1095200' => 'mdo', 'MD15G1097500' => 'mdo', 'MD15G1264200' => 'mdo', 'MD17G1190800' => 'mdo', 'MD17G1192400' => 'mdo', 'Medtr1g026910' => 'mtr', 'Medtr1g061710' => 'mtr', 'Medtr2g010740' => 'mtr', 'Medtr3g109950' => 'mtr', 'Medtr3g109980' => 'mtr', 'Medtr3g110012' => 'mtr', 'Medtr3g110018' => 'mtr', 'Medtr5g019950' => 'mtr', 'Medtr5g019970' => 'mtr', 'Medtr7g103300' => 'mtr', 'Medtr8g077830' => 'mtr', 'Medtr8g088070' => 'mtr', 'Medtr8g088080' => 'mtr', 'MELO3C002500.2' => 'cme', 'MELO3C003580.2' => 'cme', 'MELO3C024504.2' => 'cme', 'Migut.A00246' => 'egut', 'Migut.C00222' => 'egut', 'Migut.H01544' => 'egut', 'Migut.H01547' => 'egut', 'Migut.H01549' => 'egut', 'Migut.I00950' => 'egut', 'Migut.J00490' => 'egut', 'Migut.L01739' => 'egut', 'MSTRG.11064' => 'ama', 'MSTRG.11718' => 'ama', 'MSTRG.19214' => 'ama', 'MSTRG.22670' => 'ama', 'MSTRG.7248' => 'ama', 'Nitab4.5_0000052g0160' => 'nta', 'Nitab4.5_0000132g0350' => 'nta', 'Nitab4.5_0000351g0140' => 'nta', 'Nitab4.5_0000434g0080' => 'nta', 'Nitab4.5_0000664g0340' => 'nta', 'Nitab4.5_0000680g0090' => 'nta', 'Nitab4.5_0000900g0110' => 'nta', 'Nitab4.5_0001315g0320' => 'nta', 'Nitab4.5_0001567g0020' => 'nta', 'Nitab4.5_0001968g0020' => 'nta', 'Nitab4.5_0002345g0010' => 'nta', 'Nitab4.5_0002859g0070' => 'nta', 'Nitab4.5_0003351g0070' => 'nta', 'Nitab4.5_0004711g0030' => 'nta', 'Nitab4.5_0006314g0030' => 'nta', 'Nitab4.5_0006865g0010' => 'nta', 'Nitab4.5_0007240g0030' => 'nta', 'Nitab4.5_0008314g0040' => 'nta', 'Nitab4.5_0008314g0050' => 'nta', 'Nitab4.5_0009405g0040' => 'nta', 'Nitab4.5_0009680g0010' => 'nta', 'Nn1g03707' => 'nnu', 'Nn1g05029' => 'nnu', 'Nn1g06965' => 'nnu', 'Nn2g11717' => 'nnu', 'Nn2g13946' => 'nnu', 'Nn4g23937' => 'nnu', 'Nn5g29571' => 'nnu', 'Nn5g29593' => 'nnu', 'Nn6g35108' => 'nnu', 'Oeu009201.1' => 'oeu', 'Oeu011263.1' => 'oeu', 'Oeu012184.1' => 'oeu', 'Oeu029637.2' => 'oeu', 'Oeu030470.1' => 'oeu', 'Oeu031572.1' => 'oeu', 'Oeu040558.1' => 'oeu', 'Oeu051230.1' => 'oeu', 'Oeu063254.1' => 'oeu', 'Oeu063256.1' => 'oeu', 'Oeu063945.1' => 'oeu', 'Os01g0786700' => 'osa', 'Os01g0786800' => 'osa', 'Os03g0726500' => 'osa', 'Os08g0387200' => 'osa', 'Os08g0389700' => 'osa', 'Os09g0344800' => 'osa', 'Peaxi162Scf00015g00036' => 'pax', 'Peaxi162Scf00034g00069' => 'pax', 'Peaxi162Scf00082g01316' => 'pax', 'Peaxi162Scf00110g00104' => 'pax', 'Peaxi162Scf00185g00816' => 'pax', 'Peaxi162Scf00276g00413' => 'pax', 'Peaxi162Scf00500g00714' => 'pax', 'Peaxi162Scf00515g00431' => 'pax', 'Peaxi162Scf00523g00026' => 'pax', 'Peaxi162Scf00781g00031' => 'pax', 'PGR004G2406' => 'pgr', 'PGR004G2418' => 'pgr', 'PGR031G2311' => 'pgr', 'PGR044G0439' => 'pgr', 'PGR102G0424' => 'pgr', 'PGR102G0626' => 'pgr', 'PGR102G1397' => 'pgr', 'PGR142G2694' => 'pgr', 'PGSC0003DMG400002544' => 'stu', 'PGSC0003DMG400002730' => 'stu', 'PGSC0003DMG400005071' => 'stu', 'PGSC0003DMG400007576' => 'stu', 'PGSC0003DMG400007578' => 'stu', 'PGSC0003DMG400010833' => 'stu', 'PGSC0003DMG400014894' => 'stu', 'PGSC0003DMG400018589' => 'stu', 'PGSC0003DMG400021728' => 'stu', 'Phvul.001G061000' => 'pvu', 'Phvul.001G078401' => 'pvu', 'Phvul.002G029400' => 'pvu', 'Phvul.002G218000' => 'pvu', 'Phvul.002G244604' => 'pvu', 'Phvul.002G244700' => 'pvu', 'Phvul.002G244800' => 'pvu', 'Phvul.002G244900' => 'pvu', 'Phvul.002G245000' => 'pvu', 'Phvul.002G249100' => 'pvu', 'Phvul.003G253000' => 'pvu', 'Phvul.005G168100' => 'pvu', 'Phvul.006G196700' => 'pvu', 'Phvul.007G225100' => 'pvu', 'Phvul.009G106400' => 'pvu', 'Potri.001G182700' => 'ptr', 'Potri.001G183300' => 'ptr', 'Potri.001G183400' => 'ptr', 'Potri.003G053000' => 'ptr', 'Potri.005G124200' => 'ptr', 'Potri.006G117900' => 'ptr', 'Potri.006G242100' => 'ptr', 'Potri.007G026800' => 'ptr', 'Potri.011G030900' => 'ptr', 'Potri.018G037400' => 'ptr', 'Potri.018G037500' => 'ptr', 'Pp3c20_11020' => 'ppa', 'Pp3c20_11021' => 'ppa', 'Pp3c3_30550' => 'ppa', 'Pp3c6_6340' => 'ppa', 'Prupe.1G452300' => 'ppe', 'Prupe.3G064600' => 'ppe', 'Prupe.3G066000' => 'ppe', 'Prupe.3G066100' => 'ppe', 'Prupe.3G068200' => 'ppe', 'Prupe.3G068300' => 'ppe', 'Prupe.3G068400' => 'ppe', 'Prupe.3G299700' => 'ppe', 'Prupe.3G299800' => 'ppe', 'Prupe.4G028900' => 'ppe', 'Prupe.7G121400' => 'ppe', 'Prupe.7G151300' => 'ppe', 'Prupe.7G153300' => 'ppe', 'Psat0s4271g0080' => 'psa', 'Psat0s700g0080' => 'psa', 'Psat1g211440' => 'psa', 'Psat2g160560' => 'psa', 'Psat3g037400' => 'psa', 'Psat4g092080' => 'psa', 'Psat6g035720' => 'psa', 'Psat6g077480' => 'psa', 'Psat7g066880' => 'psa', 'PSO063G3199' => 'pso', 'PSO210G2484' => 'pso', 'PSO229G0030' => 'pso', 'PSO229G0066' => 'pso', 'PSO339G0002' => 'pso', 'PSO339G4666' => 'pso', 'PSO541G0474' => 'pso', 'PSO675G2650' => 'pso', 'PSO675G4446' => 'pso', 'PSO782G0798' => 'pso', 'PSO782G0823' => 'pso', 'PSO782G1407' => 'pso', 'PSO782G2381' => 'pso', 'PSO782G3273' => 'pso', 'PSO782G4274' => 'pso', 'PSO782G4437' => 'pso', 'PSO782G4688' => 'pso', 'PSO801G0164' => 'pso', 'PSO832G1324' => 'pso', 'PSO832G1338' => 'pso', 'PSO832G1662' => 'pso', 'PSO832G1818' => 'pso', 'PSO832G2128' => 'pso', 'PSO832G2406' => 'pso', 'PSO832G3246' => 'pso', 'PSO832G4072' => 'pso', 'QL05p022110' => 'qlo', 'QL05p022149' => 'qlo', 'QL05p077124' => 'qlo', 'QL06p045755' => 'qlo', 'QL07p041072' => 'qlo', 'QL12p026451' => 'qlo', 'QL93p0073_1211' => 'qlo', 'RcHm_v2.0_Chr2g0101821' => 'rch', 'RcHm_v2.0_Chr2g0138671' => 'rch', 'RcHm_v2.0_Chr2g0138691' => 'rch', 'RcHm_v2.0_Chr2g0139111' => 'rch', 'RcHm_v2.0_Chr2g0139121' => 'rch', 'RcHm_v2.0_Chr2g0139161' => 'rch', 'RcHm_v2.0_Chr3g0471661' => 'rch', 'RcHm_v2.0_Chr5g0004461' => 'rch', 'RcHm_v2.0_Chr6g0305781' => 'rch', 'RcHm_v2.0_Chr7g0240101' => 'rch', 'Rhsim02G0114600' => 'rsi', 'Rhsim02G0114800' => 'rsi', 'Rhsim02G0182100' => 'rsi', 'Rhsim03G0084700' => 'rsi', 'Rhsim10G0123000' => 'rsi', 'Rhsim10G0123100' => 'rsi', 'Rhsim12G0199800' => 'rsi', 'Rhsim13G0162100' => 'rsi', 'Sabra01G0144400' => 'sbr', 'Sabra01G0145000' => 'sbr', 'Sabra03G0026500' => 'sbr', 'Sabra04G0018200' => 'sbr', 'Sabra06G0092800' => 'sbr', 'Sabra06G0189600' => 'sbr', 'Sabra07G0023500' => 'sbr', 'Sabra11G0018400' => 'sbr', 'Sabra11G0023900' => 'sbr', 'Sabra11G0024300' => 'sbr', 'Sabra18G0038200' => 'sbr', 'SalBow1G6375' => 'sbo', 'SalBow2G0483' => 'sbo', 'SalBow3G0324' => 'sbo', 'SalBow3G2182' => 'sbo', 'SalBow4G1047' => 'sbo', 'SalBow8G3984' => 'sbo', 'Sc05g0008450' => 'sci', 'Sc09g0009100' => 'sci', 'Sc15g0001290' => 'sci', 'Sc16g0000900' => 'sci', 'Sc20g0005890' => 'sci', 'Sed0005980' => 'sed', 'Sed0014735' => 'sed', 'Sed0017934' => 'sed', 'Sed0023653' => 'sed', 'Sed0025482' => 'sed', 'SEGI_10167' => 'sgi', 'SEGI_14662' => 'sgi', 'SEGI_26317' => 'sgi', 'SEGI_31844' => 'sgi', 'SEGI_33088' => 'sgi', 'SEGI_33938' => 'sgi', 'SGA_v2.0_scaffold199G41200' => 'sas', 'SGA_v2.0_scaffold27G11539' => 'sas', 'SGA_v2.0_scaffold37G14840' => 'sas', 'SGA_v2.0_scaffold40G15440' => 'sas', 'SGA_v2.0_scaffold72G24186' => 'sas', 'SGA_v2.0_scaffold89G27440' => 'sas', 'SHI10972' => 'shi', 'SHI27793' => 'shi', 'SHI27794' => 'shi', 'SMO118G0458' => 'smo', 'SMO143G0161' => 'smo', 'SMO361G0004' => 'smo', 'Solyc02g079980.3' => 'sly', 'Solyc02g085400.3' => 'sly', 'Solyc03g031530.4' => 'sly', 'Solyc03g120730.3' => 'sly', 'Solyc08g068290.3' => 'sly', 'Solyc09g008780.4' => 'sly', 'Solyc11g071310.1' => 'sly', 'Solyc12g044230.2' => 'sly', 'Solyc12g150119.1' => 'sly', 'Sopen02g024730' => 'spe', 'Sopen02g030090' => 'spe', 'Sopen03g005420' => 'spe', 'Sopen03g039550' => 'spe', 'Sopen08g022140' => 'spe', 'Sopen09g003570' => 'spe', 'Sopen11g028990' => 'spe', 'Sopen12g022430' => 'spe', 'Sopen12g022470' => 'spe', 'Sp2g02810' => 'spa', 'Sp4g05380' => 'spa', 'Sp4g18910' => 'spa', 'Sp7g19340' => 'spa', 'TAR381G1383' => 'tar', 'TAR383G0316' => 'tar', 'TAR624G0380' => 'tar', 'TAR624G1371' => 'tar', 'TAR628G0794' => 'tar', 'TAR633G0393' => 'tar', 'TAR636G2441' => 'tar', 'THA.LOC104803812' => 'tha', 'THA.LOC104805133' => 'tha', 'THA.LOC104813355' => 'tha', 'THA.LOC104813356' => 'tha', 'THA.LOC104818905' => 'tha', 'THA.LOC104827497' => 'tha', 'Thecc.01G037300' => 'tca', 'Thecc.05G077800' => 'tca', 'Thecc.06G091200' => 'tca', 'Thecc.06G208900' => 'tca', 'Thecc.09G040000' => 'tca', 'Thecc.09G040100' => 'tca', 'Thhalv10000151m.g' => 'esa', 'Thhalv10007599m.g' => 'esa', 'Thhalv10016620m.g' => 'esa', 'Thhalv10023449m.g' => 'esa', 'Thhalv10025170m.g' => 'esa', 'TPR.G1373' => 'tpr', 'TPR.G20005' => 'tpr', 'TPR.G20014' => 'tpr', 'TPR.G20031' => 'tpr', 'TPR.G28679' => 'tpr', 'TPR.G31494' => 'tpr', 'TPR.G32661' => 'tpr', 'TPR.G34981' => 'tpr', 'TPR.G5648' => 'tpr', 'TPR.G6753' => 'tpr', 'TPR.G766' => 'tpr', 'TPR.G8443' => 'tpr', 'TWI09G0360' => 'twi', 'TWI18G1174' => 'twi', 'TWI34G1670' => 'twi', 'TWI38G2150' => 'twi', 'TWI74G0165' => 'twi', 'TWI77G0509' => 'twi', 'unitig_26.g9383' => 'ugi', 'unitig_26.g9384' => 'ugi', 'unitig_32.g10922' => 'ugi', 'unitig_578.g15776' => 'ugi', 'unitig_61.g26113' => 'ugi', 'unitig_748.g8215' => 'ugi', 'vmacro03735' => 'vma', 'vmacro07345' => 'vma', 'vmacro11078' => 'vma', 'vmacro12725' => 'vma', 'vmacro16965' => 'vma', 'VMungo0251G1688' => 'vmu', 'VMungo0251G2050' => 'vmu', 'VMungo0251G2166' => 'vmu', 'VMungo0540G2139' => 'vmu', 'VMungo0647G0094' => 'vmu', 'VMungo0647G0530' => 'vmu', 'VMungo0647G0967' => 'vmu', 'VMungo0720G0041' => 'vmu', 'VMungo0720G2498' => 'vmu', 'VMungo0720G2608' => 'vmu', 'VMungo1080G0301' => 'vmu', 'VMungo1215G2365' => 'vmu', 'VMungo1309G1638' => 'vmu', 'VMungo1383G3728' => 'vmu', 'Zm00001eb055880' => 'zma', 'Zm00001eb098390' => 'zma', 'Zm00001eb151220' => 'zma', 'Zm00001eb310450' => 'zma' ) $gf_id = 'HOM05D000682' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000682' ) $data_identifier = 'HOM05D000682' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 9, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 15, 'cla' => (int) 4, 'col' => (int) 11, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 14, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 24, 'fve' => (int) 11, 'gma' => (int) 22, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 10, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 10, 'lal' => (int) 13, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 12, 'mpo' => (int) 5, 'mbi' => (int) 10, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 21, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 15, 'ptr' => (int) 11, 'ppa' => (int) 4, 'ppe' => (int) 13, 'psa' => (int) 9, 'pso' => (int) 26, 'qlo' => (int) 7, 'rch' => (int) 10, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 14, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb310450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1